rs221123718 SNP Detail

Summary

• ID
  rs221123718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7631545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGGGGGT GTGGGGGCTG GGAGAACTCT
  GAATGCAAAG CAGCCGGGAA TCCTTATTCA AAGTGAATTG TTATTCTCAA AGTCCTCTTG
  TGTCGCCCCC CCCCCCCATC CCTGGTTGTT GTGATGGTTC AAGCGAGGGA GTTGGGGTCC
  Y
  GGCCTTTCTA TTGTTCCGAC CCTTCAAGGG CCTGTGGGTA GGAAGCAGTA TAGGGTAGGG
  GGAGGCAAAA GATTTGGGAC TTGGTCTAGG CAGTGCCCTT CTGGATATGA GCCCGCTTCG
  CTTCAGTGTC TGGGGAAGGG AGGGTATTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888246	CHEV_X_7342432	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221123718					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7631545 () rs orientation: forward

Symbol	Name	Function Class
Rr394688	regulatory region 394688	within coordinates
Rr689656	regulatory region 689656	1209 bp distal
Rr689657	regulatory region 689657	898 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160430	transcription start site region 160430	1341 bp downstream
Tssr160431	transcription start site region 160431	1043 bp downstream
Tssr160432	transcription start site region 160432	1019 bp downstream
Tssr160433	transcription start site region 160433	985 bp downstream
Tssr160434	transcription start site region 160434	955 bp downstream
Tssr160435	transcription start site region 160435	891 bp downstream
Tssr162815	transcription start site region 162815	1518 bp upstream
Tssr162816	transcription start site region 162816	491 bp downstream