rs221125812 SNP Detail

Summary

• ID
  rs221125812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10107679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATGGAT TTTTTTTTTT
  TTTTTAAATC AATGCTCTGC TCATTCGATT TATAAAAACA GCCACGCTCT TCAGTTTGGG
  AATCTACTGA AGGCTGCAAC TAACTGCATG TAGCCACCAG GTTCAAGGCA GAGTGTGTGA
  GATTTACAAA AATAATCATG TTGACAAAAG TCGCACCCCA AGTCAGCCCT TTACACGCCC
  Y
  GAAGGCAAGA AACTTTCTAA AAGGGGAATC GAAGCAGGCC CTAGAGGACA GGTAAGGCTC
  TACTGACAAG GCAGACTAAG GCCACTGTGG CCAATATTCG GTCGACGCCC CACAGAAAGC
  CAAGCTCACC ACACCCTTCA TCTCCCACCC CTCGCGGGTC TCTCACAGTC CCGCCATCCC
  TGCCCTCCCC TGCGTCTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348594580	MGP_WTSI_1_10027535	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221125812					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348594580	MGP_WTSI_1_10027535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10107679 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	within coordinates
Cpgi31	CpG island 31	101 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	533 bp upstream
Rr407692	regulatory region 407692	441 bp proximal
Rr407693	regulatory region 407693	663 bp proximal
Rr407694	regulatory region 407694	819 bp proximal
Rr407695	regulatory region 407695	1829 bp proximal
Tssr4	transcription start site region 4	754 bp upstream
Tssr10955	transcription start site region 10955	429 bp downstream
Tssr10956	transcription start site region 10956	468 bp downstream
Tssr10957	transcription start site region 10957	478 bp downstream
Tssr10958	transcription start site region 10958	652 bp downstream