rs221126372 SNP Detail

Summary

• ID
  rs221126372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36570102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGCTCGC AGGAAGAGGA GACGCCCAAC
  CTTTCGATGG ACCATCTCCT CAAAATCATG TTTCTGTAAG ATCAGAAGGT CAAATCCATG
  CACCAGACTT AGAACACTTA CCAATTCAGG AAAAACAAAA CAAAACCTAA ACAACAATAA
  Y
  GAGATAACTC AATAGTCCTT CTTTGAATTT CTACCACGTC ATAGTCTAAG AGTCTGCCCG
  AGGACCCTCA GCATCTTGTA GTTTGGAATT CCTATGTGAG CCAGATGTAG AATTTGAATT
  GGTGCAAAAA GAATAAGACA CTTTTGCCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323643780	CHEV_11_36492777	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221126372					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36570102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1695 bp distal
Rr246545	regulatory region 246545	101 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1734 bp upstream
Tssr107450	transcription start site region 107450	1585 bp upstream
Tssr107451	transcription start site region 107451	1533 bp upstream
Tssr107452	transcription start site region 107452	1489 bp upstream
Tssr107453	transcription start site region 107453	1438 bp upstream
Tssr107454	transcription start site region 107454	1381 bp upstream
Tssr107455	transcription start site region 107455	1336 bp upstream
Tssr107456	transcription start site region 107456	1309 bp upstream
Tssr107457	transcription start site region 107457	735 bp upstream