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rs221126372 SNP Detail
Summary
  • ID
    rs221126372
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:36570102 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      TGAGCTCGC AGGAAGAGGA GACGCCCAAC
    CTTTCGATGG ACCATCTCCT CAAAATCATG TTTCTGTAAG ATCAGAAGGT CAAATCCATG
    CACCAGACTT AGAACACTTA CCAATTCAGG AAAAACAAAA CAAAACCTAA ACAACAATAA
    Y
    GAGATAACTC AATAGTCCTT CTTTGAATTT CTACCACGTC ATAGTCTAAG AGTCTGCCCG
    AGGACCCTCA GCATCTTGTA GTTTGGAATT CCTATGTGAG CCAGATGTAG AATTTGAATT
    GGTGCAAAAA GAATAAGACA CTTTTGCCTG                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323643780 CHEV_11_36492777 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs221126372 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:36570102 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2736 CpG island 2736 1695 bp distal
Rr246545 regulatory region 246545 101 bp distal
Tenm2 teneurin transmembrane protein 2 within coordinates
Tssr107449 transcription start site region 107449 1734 bp upstream
Tssr107450 transcription start site region 107450 1585 bp upstream
Tssr107451 transcription start site region 107451 1533 bp upstream
Tssr107452 transcription start site region 107452 1489 bp upstream
Tssr107453 transcription start site region 107453 1438 bp upstream
Tssr107454 transcription start site region 107454 1381 bp upstream
Tssr107455 transcription start site region 107455 1336 bp upstream
Tssr107456 transcription start site region 107456 1309 bp upstream
Tssr107457 transcription start site region 107457 735 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory