rs221129117 SNP Detail

Summary

• ID
  rs221129117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138351720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGTTTC CAAGAGCCCC
  AGTCTCCGGC CAGTGTGCGA GTGTACATGT GTGTGCACCT ATGTAGAGGT GTATGTGAAT
  ACATGCGCTA GGAAACCTCA TAGATATTGT GAGATGGTGA AGATTGCATC TACAAACTCG
  TCTCCGGGGC ACGTGATGTA TACAGGTCAC AGGATAAGGT ATATGGGTCA AGGGTACAGC
  W
  GCTTGGGCTG GGGCTGAGAA CCTGAATAAA AAGACTTGCT TACCTCAAAG TGGTCTAAAG
  AAGATGAGAG CAGTTTCCAA ACCTTTGCTT TCTTTGGGGA GCTCAGAACA GAATTGGTGG
  CTTAACAGAG GAGTCACTGA GTCCTGCCCT CTGCATGTTC CATAGTCCCC CATTCTCCAC
  CTTTCCCCAT CCCCTACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359915839	MGP_WTSI_3_138308923	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	A	A	T	T	A	A	T	T	T	T	T	T	T	T	A	A	T	A	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221129117					SNP	T	T	T	A	T	T	A	A	T	T	A	A	T	T	T	T	T	T	T	T	A	A	T	A	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359915839	MGP_WTSI_3_138308923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138351720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13877	CpG island 13877	1679 bp distal
Rr586173	regulatory region 586173	235 bp distal
Rr586174	regulatory region 586174	381 bp distal
Rr586175	regulatory region 586175	924 bp proximal