rs221135611 SNP Detail

Summary

• ID
  rs221135611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49429233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCAATAGA TATAAAATTT GCTAGCTATT
  TGTAATTGTG GATAATTTTC GCTAGCGTTT CCCTCTCTTT CCCTCCCCTC TTTCTGCGCC
  CCATTTCAAA TTTGGGGGGT GAGAACATCA GAATAACTCC CTATTATTTT GAGTATTGCA
  Y
  GTTTCTGGTA GATTTTAGTA CCACACATAG GCCCTGTTTT TTCTCCTTCC TTTTTTTTTT
  TTATATCAAG ACTGAGAGAT CATTTAGCTA AGAGCTCATC AAAATGAATG CTGGCATGGG
  TAGAGTATTT TACCTTAAAG AGGAGGGGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324031622	CHEV_12_50483437	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221135611					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49429233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	511 bp proximal
Foxg1	forkhead box G1	433 bp upstream
Gm34304	predicted gene, 34304	622 bp upstream
Gm56518	predicted gene, 56518	1111 bp downstream
Rr465759	regulatory region 465759	within coordinates
Rr465760	regulatory region 465760	568 bp proximal
Rr465761	regulatory region 465761	1304 bp proximal
Tssr3838	transcription start site region 3838	1882 bp upstream
Tssr113389	transcription start site region 113389	455 bp downstream
Tssr113390	transcription start site region 113390	372 bp downstream
Tssr113391	transcription start site region 113391	202 bp upstream
Tssr113392	transcription start site region 113392	226 bp upstream
Tssr113393	transcription start site region 113393	341 bp upstream
Tssr113394	transcription start site region 113394	635 bp upstream
Tssr113395	transcription start site region 113395	1467 bp upstream
Tssr113396	transcription start site region 113396	1675 bp upstream
Tssr113397	transcription start site region 113397	1808 bp upstream
Tssr113398	transcription start site region 113398	1837 bp upstream
Tssr113399	transcription start site region 113399	1906 bp upstream
Tssr113400	transcription start site region 113400	1916 bp upstream
Tssr116231	transcription start site region 116231	620 bp upstream