AGAGACCCCT TCTAAAAGCA GAACTAGAGG CAAGGGGCAA GACAAAATGT TTAAACTTTA AATTTTTCCT ATCAAAAAAA ATCACTTTTT CATCCTGACT GCCCAGTGTA AACCCCGAGG CACCTGTGTT ATGCCCACTG TGGGAAATCT CCTGTTGTCA AAGAACTCAA GGCACACTAC GGTAGCAGCA ATGATAATGG Y TGCTGCTGTC CCGGCAGTTT GCCCTGGGTA TGTCAGCCCA ATTTGAGTGA ACTTAGAGGA GTCAGCAGAC ACAAACTGTC TTCCTAAGAG AGACTGCCCA CATCACCAAA GGGTCCTTAG CTAGATAGAG CAAGGTATAT AAAAGCCTTA CTGGTCTAGC ACAAAGGAGG AAGAACTAGC TCCTAATATC CTTCATGTTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S5/SvEvBrd |
AKR/J |
C57BL/6J |
DBA/1J |
FVB/NJ |
LP/J |
SJL/J |
SPRET/EiJ |
ST/bJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss350399193 | MGP_WTSI_1_90160026 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | C | T |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S5/SvEvBrd |
AKR/J |
C57BL/6J |
DBA/1J |
FVB/NJ |
LP/J |
SJL/J |
SPRET/EiJ |
ST/bJ |
||||
rs221142808 | SNP | T | T | T | T | T | T | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss350399193 | MGP_WTSI_1_90160026 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr1:88191173 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Hjurp | Holliday junction recognition protein | within coordinates | ||||||
Mroh2a | maestro heat-like repeat family member 2A | 1162 bp downstream | ||||||
Rr18062 | regulatory region 18062 | 1373 bp distal | ||||||
Rr35066 | regulatory region 35066 | within coordinates | ||||||
Tssr12870 | transcription start site region 12870 | 1367 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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