rs221146095 SNP Detail

Summary

• ID
  rs221146095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174189231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGATTG GGCATGAGAT
  GGGGCACATG TGGGGAGGCC CAACATATGA TTGGGCATAA GATGGGGGCC CAACATATGA
  TTGGGTGTGA GAAGGGGGAC ATATGGGGAG GCCCAACATA TGATTGGGTA TGAGATGGGA
  CACATGGGGG CCCAACATAT GATTGCATGT GAGATGGGGC ACATGTGGAA AGGCCCAACA
  Y
  ATGATTGTGC ATGAGATGGG GCACACATGG GCAGGCCCAA CATATGATTG GGTGTGAGAA
  TGGGGACATA TGGGGAGGCC AAACATATGA TTGGGTGTGA GAAGGGGGAC AGATGGGGGC
  CCCGAATATG ATTGGGTATG AGATGGGGCA CAAATGGGGG CCCAACATAT GATTGGGTGT
  GAGAAGGGGG ACATATGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687577	MGP_WTSI_2_174172939	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221146095					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687577	MGP_WTSI_2_174172939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174189231 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	694 bp downstream
Rr572113	regulatory region 572113	within coordinates
Tssr792	transcription start site region 792	1088 bp downstream
Tssr22137	transcription start site region 22137	1987 bp downstream
Tssr22138	transcription start site region 22138	1922 bp downstream
Tssr22139	transcription start site region 22139	1405 bp downstream
Tssr22140	transcription start site region 22140	1124 bp downstream
Tssr22141	transcription start site region 22141	1105 bp downstream
Tssr22142	transcription start site region 22142	1068 bp downstream
Tssr22143	transcription start site region 22143	923 bp downstream
Tssr22144	transcription start site region 22144	858 bp downstream
Tssr22145	transcription start site region 22145	837 bp downstream
Tssr22146	transcription start site region 22146	800 bp downstream
Tssr28014	transcription start site region 28014	1898 bp upstream