rs221150050 SNP Detail

Summary

• ID
  rs221150050
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110725820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTAGCC CTTCCTGGGG
  GACACAAAAA CAGGTCCTCT GAGCTCAGAC TAGCAAAGCA TTCCACCTCG TGTCTCCAAT
  TTCAGGCATC TGTGGCCCCT CAAGGACCTC AAGCTGACAA GCAATCAGGT GAGAGGGCTG
  TGTTCCGCTT GCCTGGGAGG AGGGGCCTGT GGTCCTGGAA GGAGGAGGGG CCTGTGGTTC
  K
  GGAAGGAGGA GGGGCCTGTG GTCCTAGAAG GAGGGGCCTG TGGTCCTAGG AGGAGGAGGG
  TCCTGTGGTA CTGGGAGGAG GGGTGTGTGG TCTTGGAGCA TCGAAGTCTT GACTGCCTAG
  GGAGAGACCA GAGAGGAAGG AGAGACCCAG GCTTCCTTCC TGTCACAGGT GACTCCCACG
  TGACCAGGCT CCCGCAGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss378912641	MGP_WTSI_9_110799256	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs221150050					SNP	G	T	T	T	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378912641	MGP_WTSI_9_110799256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110725820 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	853 bp upstream
Rr192781	regulatory region 192781	820 bp distal
Rr205816	regulatory region 205816	819 bp distal
Rr205817	regulatory region 205817	within coordinates
Tssr87434	transcription start site region 87434	1002 bp downstream
Tssr87435	transcription start site region 87435	971 bp downstream
Tssr87436	transcription start site region 87436	196 bp upstream