rs221150650 SNP Detail

Summary

• ID
  rs221150650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38302833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGCTTC CTTCCGCTTG
  GGCTGGCCCA TCCTGTTGAT CTGAGTCTGA AGGGCTGGAG CAGCTGGCCT GGGCACCTGC
  TGCAGCGCAG GAAGCTCTTG TGTGTGCCCA GTGGCAGGCC TGCCTGCCTG CCTTCCTGTC
  AGGGAGCCGC CTCCGGGAGA GGTCACAGCC AGACCCACCA AGCCTGAACC CTGTGTCTGG
  Y
  GTGGTGCCCC CACACCCACT CTGCAGGCTG AGTTGTAAGG AGCGTTTGGG ACTTGGAGTG
  ATCACAGCAG GAAAGAGGAG AGAAAGGGGT AGGAGAAACT GGGTAGTGGT GACCTGGAGA
  TTCAGAGAAA GCCTTCCCCA GGCACTTCAG ACCTAATATC GCCAAATCTA AAACTCCTCT
  TTCTTTGTGG TCTTAAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393693091	MGP_WTSI_15_38232344	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221150650					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393693091	MGP_WTSI_15_38232344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38302833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	595 bp distal
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	1883 bp upstream
Rr501357	regulatory region 501357	1902 bp distal
Rr501358	regulatory region 501358	1708 bp distal
Rr501359	regulatory region 501359	1028 bp distal
Rr501360	regulatory region 501360	1014 bp distal
Rr501361	regulatory region 501361	within coordinates
Tssr131116	transcription start site region 131116	1369 bp downstream
Tssr134125	transcription start site region 134125	1918 bp upstream
Tssr134126	transcription start site region 134126	1874 bp upstream