rs221152739 SNP Detail

Summary

• ID
  rs221152739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11175422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCCTGT CTCACCCCCC
  CAAATATATA TATATATAAA TTATAAAAAT TATATGAATC ATATAAAATA TAAATATATA
  TTTAATTATA ATGTATGTTG ATAATAGTAT TATGATATAT TCTATATTAT TTATAATATA
  TAAATATATA AGTATATAAT ATTTATATAG CACTTTTAAA ATTAATACAC TATATGGTTC
  Y
  GTATAATATA ATAACATATA ATGTATTATA TATAAAAATA GAAAAGAGGC CCTTGGTCCT
  GTGAAGGCTC TATGCCCCAG TATAGGGAAA TGCTGGGGCC AGGAAGTGAG AGTGGGGTGG
  GTTGGTGAGC AGGGGGAAGG GGGAGGGGGA AGGAGGGAGG GGGATAGGGG ATTTTTTTCA
  GAGAGAAAAC CAGGAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401746377	MGP_WTSI_19_11272548	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221152739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401746377	MGP_WTSI_19_11272548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11175422 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	within coordinates
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	1321 bp upstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1366 bp upstream
Tssr158300	transcription start site region 158300	1316 bp upstream