rs221157967 SNP Detail

Summary

• ID
  rs221157967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94965621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTCACAG AATAGAGCGG GAGATGTTGC
  AGAATCTCTT CTAGTGTGTT AGTTCCGGCC ATGCACATTC AACAACAGAA CATCTGAGAA
  CTCTGGACTG GGCTGGGGGG AGGCAACAGC ACTGCTGTAG CAACTAACTA TTATCAGAGG
  R
  CCTCAGAAAG GTAGAAGGTT AAATCTGCCC AGCCAGGACA GGAAGGGTGT GGTGGATCCA
  CCTTCTTCTG CAGGGGCCAG GTAGGGTAGA GACTAAGTCC AGGTGGGCAG TACGGACAAG
  GGCTGGGCCA GCAGGACAGA GGCAAAGACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817651	CHEV_11_94936109	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221157967					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94965621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	1044 bp proximal
Gm53645	predicted gene, 53645	1389 bp upstream
Gm57362	predicted gene, 57362	1633 bp upstream
Itga3	integrin alpha 3	within coordinates
Rr454942	regulatory region 454942	1489 bp distal
Rr454943	regulatory region 454943	within coordinates
Rr454944	regulatory region 454944	840 bp proximal
Rr454945	regulatory region 454945	1143 bp proximal
Rr454946	regulatory region 454946	1358 bp proximal
Rr454947	regulatory region 454947	1624 bp proximal
Rr454948	regulatory region 454948	1644 bp proximal
Rr454949	regulatory region 454949	1909 bp proximal
Tssr3652	transcription start site region 3652	1797 bp downstream
Tssr110254	transcription start site region 110254	1771 bp downstream
Tssr110255	transcription start site region 110255	1848 bp downstream
Tssr110256	transcription start site region 110256	1862 bp downstream