rs221158763 SNP Detail

Summary

• ID
  rs221158763
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108902471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGTGGG TACATGTCCC
  GGCTTTGCCC TATGCTGTCT GAGTATCCTC GGACAGGCCA CGCCCCTTCA TTGCCTCTGC
  TTCTTCATCT CCAACAGGAG GAGGATGGGA ATGGTCAGTA GCTCCTAGGC CTGGATCACT
  TATGCACAGC CTTTTATGCA ACCTCAGTGG GGAGAACCCT CAATCCATGC CAGGTCCTGT
  T
  TTACCTACAT TGTTCCAACA TGCCAGAGGC TGTTCACCTT GGAGACCTGC TGCGGATATG
  GGTACGGCCC GGAGATTTAC AAGCTCTCCC CCGGATTTTC AAGGGCCAGC GAGAGCTCAC
  CGGATGCCGC CGGAACCATG ACGCTTTCCA AGGCACGTGC CCCTCTCTCA GGGCGAACCC
  ATTCCAGGGC GCCCTGCCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
ss384649007	MGP_WTSI_11_108872959	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
rs221158763					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384649007	MGP_WTSI_11_108872959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108902471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	within coordinates
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	70 bp upstream
Tssr105628	transcription start site region 105628	170 bp upstream
Tssr105629	transcription start site region 105629	186 bp upstream
Tssr105630	transcription start site region 105630	224 bp upstream
Tssr105631	transcription start site region 105631	341 bp upstream
Tssr111515	transcription start site region 111515	60 bp downstream
Tssr111516	transcription start site region 111516	126 bp downstream
Tssr111517	transcription start site region 111517	195 bp downstream
Tssr111518	transcription start site region 111518	215 bp downstream
Tssr111519	transcription start site region 111519	228 bp downstream
Tssr111520	transcription start site region 111520	258 bp downstream
Tssr111521	transcription start site region 111521	343 bp downstream