rs221159425 SNP Detail

Summary

• ID
  rs221159425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAATCAG TATAAAAAGT
  TCAATTATGC ATAGGTAGGA AGGCTGGGGG AAGAATTAAC CATGAGCTAA TGTGCTGCTG
  TTAAACTAGG AAAGAGTTTG AAATGAGCAA TCTGCAGAGC AAGATTGAGG ACGAGCAGGC
  CCTCGGCATG CAGCTGCAGA AGAAGATCAA GGAGTTGCAG GTACATCCAT ATCTTCTATC
  Y
  GTCTAATTCA TCAGTAAACG AAAAATGATT GACCCAAGAA GCTGAGTTGG TCTTTTCCAC
  CACCTCCAGG CCCGCATCGA GGAGCTGGAG GAGGAAATCG AGGCAGAGCG GGCCTCCAGG
  GCTAAAGCAG AGAAGCAGCG CTCTGACCTC TCCCGGGAAC TGGAGGAGAT CAGCGAGAGG
  CTGGAAGAAG CTGGCGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730844	MGP_WTSI_11_67066586	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221159425					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730844	MGP_WTSI_11_67066586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143910 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	1649 bp upstream
Tssr3529	transcription start site region 3529	1705 bp upstream
Tssr102199	transcription start site region 102199	1349 bp downstream
Tssr102200	transcription start site region 102200	1198 bp downstream
Tssr102201	transcription start site region 102201	391 bp upstream
Tssr102202	transcription start site region 102202	913 bp upstream
Tssr102203	transcription start site region 102203	973 bp upstream
Tssr102204	transcription start site region 102204	1371 bp upstream
Tssr102205	transcription start site region 102205	1589 bp upstream
Tssr102206	transcription start site region 102206	1693 bp upstream
Tssr108532	transcription start site region 108532	1326 bp upstream
Tssr108533	transcription start site region 108533	1174 bp upstream
Tssr108534	transcription start site region 108534	480 bp upstream
Tssr108535	transcription start site region 108535	374 bp upstream
Tssr108536	transcription start site region 108536	960 bp downstream
Tssr108537	transcription start site region 108537	972 bp downstream
Tssr108538	transcription start site region 108538	1474 bp downstream
Tssr108539	transcription start site region 108539	1682 bp downstream
Tssr108540	transcription start site region 108540	1742 bp downstream