rs221165607 SNP Detail

Summary

• ID
  rs221165607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91985853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GGAAGACCCA CTGTAAATGT
  K
  GGCATCTGGA TTCATGGCTG GGCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319842243	CHEV_1_93954708	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221165607					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91985853 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr23700	regulatory region 23700	348 bp proximal
Rr35318	regulatory region 35318	1854 bp distal
Rr35319	regulatory region 35319	1949 bp proximal
Rr366965	regulatory region 366965	655 bp upstream
Tssr8116	transcription start site region 8116	804 bp upstream
Tssr8117	transcription start site region 8117	839 bp upstream