rs221169625 SNP Detail

Summary

• ID
  rs221169625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84569256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGACTG GTCGTATAAA
  ATTTGCTGTT CTAGCAAGTA GTAGGTCAAC TTCAATTTCT GCCTTCGTAA TCAAACTTGA
  TTACTCTGCT CAAAAAATAT GACTAGGACC AATACAAAAC ATATATGTTA AATTAGACGC
  TGCCTATAGG TATAATCGTG TGGGGTTTGC CTTTGTATGC CTTAGGCTGC TTTGTCTAGA
  R
  GCTGTGTCTT GGGATCACTC TCAGATGCTG TTTTGGCAAA CAAATAAACA AAAACAAAAA
  ACACCCTCTT TCTATTAAAA TTTATTTATG GTCATGGTGA ATCTCTGAGT GACCCCAGAC
  CCATAAAACA CCAACAACAA AATGACAGAT TAATCTAAGA AAACAGATTA AACAGTCTCT
  AAAGAGGCAC ATGCGTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261867	CHEV_16_84772613	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221169625					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84569256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1558 bp proximal
Jam2	junction adhesion molecule 2	1755 bp upstream
Rr392067	regulatory region 392067	1800 bp downstream
Rr518531	regulatory region 518531	within coordinates
Rr518532	regulatory region 518532	283 bp proximal
Rr518533	regulatory region 518533	1265 bp proximal
Tssr139177	transcription start site region 139177	635 bp upstream
Tssr139178	transcription start site region 139178	1284 bp upstream
Tssr139179	transcription start site region 139179	1487 bp upstream
Tssr139180	transcription start site region 139180	1522 bp upstream
Tssr139181	transcription start site region 139181	1718 bp upstream
Tssr139182	transcription start site region 139182	1768 bp upstream
Tssr139183	transcription start site region 139183	1795 bp upstream
Tssr139184	transcription start site region 139184	1807 bp upstream
Tssr139185	transcription start site region 139185	1861 bp upstream
Tssr139186	transcription start site region 139186	1895 bp upstream
Tssr139187	transcription start site region 139187	1933 bp upstream
Tssr139188	transcription start site region 139188	1953 bp upstream
Tssr139189	transcription start site region 139189	1993 bp upstream
Tssr141866	transcription start site region 141866	217 bp downstream