rs221170329 SNP Detail

Summary

• ID
  rs221170329
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135160475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA GGGTTCAAGA GGAAGCGGAC
  T
  AGTTTCCAGA TGCCAGGGAA GCAGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321352218	CHEV_4_134989079	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221170329					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135160475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	7 bp proximal
Gm69862	predicted gene, 69862	765 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Rr602030	regulatory region 602030	within coordinates
Rr602031	regulatory region 602031	679 bp proximal
Rr602032	regulatory region 602032	776 bp proximal
Tssr39615	transcription start site region 39615	852 bp upstream
Tssr43991	transcription start site region 43991	580 bp downstream