rs221183352 SNP Detail

Summary

• ID
  rs221183352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152685538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GATGTGATGT GACTCCACCC
  Y
  TGTTGGTTTG TTTTGGTTTT GGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068368	CHEV_1_154656917	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221183352					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152685538 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	63 bp proximal
Rr28716	regulatory region 28716	537 bp distal
Tssr9423	transcription start site region 9423	1997 bp downstream
Tssr9424	transcription start site region 9424	1961 bp downstream
Tssr9425	transcription start site region 9425	1911 bp downstream
Tssr9426	transcription start site region 9426	1889 bp downstream
Tssr9427	transcription start site region 9427	1871 bp downstream
Tssr9428	transcription start site region 9428	1853 bp downstream
Tssr9429	transcription start site region 9429	1828 bp downstream
Tssr9430	transcription start site region 9430	320 bp upstream
Tssr9431	transcription start site region 9431	1629 bp upstream
Tssr9432	transcription start site region 9432	1824 bp upstream
Tssr14234	transcription start site region 14234	1474 bp upstream
Tssr14235	transcription start site region 14235	137 bp downstream
Tssr14236	transcription start site region 14236	822 bp downstream