rs221185067 SNP Detail

Summary

• ID
  rs221185067
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCTGTTT TCTGTGACTC
  GGTGTGGATT ACTGTTAGAA TCAAATGAAT CTTTGTGATT GCTATCTTGC CTCCGATCAC
  ACCACTTAGT GCATACATGT ACCTGCTCTA GGGTTACCAG ACATTTAGGG CTACTGTTAC
  CTGAGGGATT AGAAGCAGTC GGAGAGTGCT TGGGCCCAAA CCCACAGGCC ATGCTTTTTC
  M
  TGCTCTTCAA GTTGGCTGAT CATTCTTAGG TATGCAGAGA AAAATAGCCA GGCTGGCTCT
  AAAGGCCACA GGCTTCCATC AATCTTTGAT GAATCTAACA GCTCTTTCTT TCTGGTGAGC
  ACAGCACCTC TCTTCACTTC AAAACAAATG TCCCCCATTT TTTTTTTTTA AAATCCTGGC
  TCCTATACAC TTCTCAACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720089	CHEV_5_149865704	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221185067					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	469 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	121 bp distal
Hmgb1	high mobility group box 1	1071 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr399531	regulatory region 399531	817 bp downstream
Tssr1757	transcription start site region 1757	898 bp downstream
Tssr49872	transcription start site region 49872	919 bp downstream
Tssr54620	transcription start site region 54620	1075 bp upstream
Tssr54621	transcription start site region 54621	1057 bp upstream