rs221190448 SNP Detail

Summary

• ID
  rs221190448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTTAA AGAACGATAT
  GAAAAAGGAC TGGATGCGAA AAATAAAATG CAGGCCTTTA TGCAAATGAG GAGCTCAAAT
  TCTGGCTTTC TATTGGGTAC GATATATTAA CCAATGGGAG AAACACAAAC AGAATACCTC
  CAGTTAGTAT AAATGCTTGC TGTTCAGTTG CAGAATTTAC TATATATTCT TTTCCTTTCT
  Y
  TGCTTTGCCT TTACTGATAC TTAAACGCAT ACATGTCTGG ACGCGGAAAG CAGGGTGGCA
  AGGCCCGCGC TAAGGCCAAG ACCCGCTCCT CCCGGGCCGG CCTGCAGTTC CCCGTAGGCC
  GCGTGCATCG GCTGCTCCGC AAGGGCAACT ACTCGGAGCG CGTGGGCGCC GGCGCCCCGG
  TGTACCTGGC GGCCGTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291407	CHEV_13_23842969	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221190448					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	402 bp proximal
Gm54518	predicted gene, 54518	278 bp downstream
H2ac4	H2A clustered histone 4	mRNA-UTR
H3c2	H3 clustered histone 2	1245 bp upstream
Rr403663	regulatory region 403663	within coordinates
Rr403664	regulatory region 403664	985 bp upstream
Rr475938	regulatory region 475938	within coordinates
Rr475939	regulatory region 475939	272 bp proximal
Rr475940	regulatory region 475940	509 bp proximal
Rr475941	regulatory region 475941	677 bp proximal
Tssr118860	transcription start site region 118860	14 bp downstream
Tssr118861	transcription start site region 118861	7 bp upstream
Tssr118862	transcription start site region 118862	103 bp upstream
Tssr118863	transcription start site region 118863	1241 bp upstream
Tssr121747	transcription start site region 121747	1095 bp downstream