rs221196040 SNP Detail

Summary

• ID
  rs221196040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79438119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACGTAT CACAGTGCCA
  TCCTCAGGGT CCTCATGGTC CTCACCCTTC ATGACCTTCA TGACCTCTTG CTCTATGAAC
  AGGTGCCTTT GGAAGAGCAG AGAGCATGTG AACCACTCTT GGGAAATGAC CGTCGGAATT
  AAGTTCCACT ACTAGAGAAG TTCTTCCAGA GTACATAAAG GGGCTGGGAG ACATGGCTCT
  R
  TGGTTAAGAG CATTGGCTGC TCTTCCAGAG GGTCCAGGTT CAATTCCCAG AAGCTATGTG
  GTAGCTCAAA ACCATCTTTA ATTCCAGTTC TAGAAGATCT GACGTCCTCT GGCCTTCCTG
  GCACCAGGCA TGTAAGTGGT GCACAGAAAT ACAAACAGAC AAAACAACCT ATACATATAA
  ATAGAATAAA TACATCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358583883	MGP_WTSI_3_79334734	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221196040					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358583883	MGP_WTSI_3_79334734	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79438119 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	242 bp proximal
Rr375221	regulatory region 375221	484 bp upstream
Rr578537	regulatory region 578537	774 bp distal
Rr578538	regulatory region 578538	736 bp proximal
Tssr29582	transcription start site region 29582	842 bp downstream
Tssr29583	transcription start site region 29583	1198 bp upstream
Tssr33705	transcription start site region 33705	847 bp downstream
Tssr33706	transcription start site region 33706	865 bp downstream
Tssr33707	transcription start site region 33707	883 bp downstream
Tssr33708	transcription start site region 33708	905 bp downstream
Tssr33709	transcription start site region 33709	925 bp downstream
Tssr33710	transcription start site region 33710	946 bp downstream
Tssr33711	transcription start site region 33711	981 bp downstream
Tssr33712	transcription start site region 33712	1019 bp downstream
Tssr33713	transcription start site region 33713	1062 bp downstream
Tssr33714	transcription start site region 33714	1248 bp downstream
Tssr33715	transcription start site region 33715	1352 bp downstream