rs221201220 SNP Detail

Summary

• ID
  rs221201220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97744245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACAAGC ATTTCTCAGA
  CAGCCTGAGC ATCGCCAAGC AGACCAGAAG AGCCTTAAAG AGGCTATTAA AGCAAGAAAG
  CTGACTGCCA TCTTTTATTG AGCAAGTGGT TGTTCTTCTG CAGGTGAGGA ACTTCATGAT
  CTTCTTATTT TTGCAAACTT TTATAATAAA ACTCAATACT AATCTCCATA TTTGATAGAT
  R
  AAGAAACTGA GCATGCAATG AGCTGGGTAA ATTGCCTATT GCAAAATATA CTTAAGACTT
  AGGATACTCG ATTTCAACCT ATGTGGATCC AATTCTCCTT CAACTATGAC TACTTGACCT
  TTTCAAATGA CATTCTAATT CTATAGTAAG AGTTTTCTTT CCAAGTCACT TCCATCGTGA
  CCTGGGTGAT GCTGGGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323123512	CHEV_9_97762611	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221201220					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97744245 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	1556 bp proximal
Rr205510	regulatory region 205510	1516 bp proximal