rs221212768 SNP Detail

Summary

• ID
  rs221212768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAGCTT TTTATATATG
  TAAGCTAGCA GAAGGCCAGT TTGCCATGTT ATGAATGACT GCTGCTTTCG GAGGGAGTAA
  ACCAGACATT CTGCATCCAG ATCATGCCCC TAAATTCTAT AGGTTTTGGC TAGGGCTAGG
  AGGGCCTTAT TCATCAACAA TTGAGTAAAA GGGTGTCCAC ATGGCCCATT GTTCTTGGAG
  R
  TTGAACATCA CGTGGCTTGC TAGACATGTG ATGGGGCTCA TTAAATGTTT ATTTGGGGTA
  CCTTCCAACC GCTAAAGAGG GATGAGGACA AGGATTCTAA AATGAACTTT GTCCTCCCAG
  AAACTGATCA CCCGTCCAGA AAATGCCTGT TTTAAGTAAT CACATCCAAA AATAGTGGTG
  TGTTTTAAAG CCACCTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651690	CHEV_3_9610887	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221212768					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	371 bp distal
Gm56803	predicted gene, 56803	1904 bp downstream
Rr69501	regulatory region 69501	147 bp distal
Rr73453	regulatory region 73453	654 bp proximal
Rr78141	regulatory region 78141	346 bp distal
Tssr32578	transcription start site region 32578	847 bp upstream
Tssr32579	transcription start site region 32579	801 bp upstream
Tssr32580	transcription start site region 32580	763 bp upstream
Tssr32581	transcription start site region 32581	640 bp upstream
Zfp704	zinc finger protein 704	802 bp upstream