rs221222437 SNP Detail

Summary

• ID
  rs221222437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76755513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGTGG GTGCTGGGCA
  TTCAGTACAT AGTGAACAAA CAGTCTACAC TTGTAAGAGT TTCCCATAAC ATTCTGGAAA
  TCAGGGCTCA TTGGAAAAGC ATATGAAGTC TGATCCTGGA ATAGGAGATG ACTACCCTGG
  GTCGTAGTCA TAGAGCAGTG AAAAGAGAAT TCTAGATTAA AATTCTGAGC GATCCGTGAC
  K
  CTAAGGATAG CCTAAGAGAA CAGCTTAAAT GTGCCTCGAT TTTTTTTTCT TCCCTGAAGG
  CTCCTCTCAT TCAGGAGCTA TCTGAATCAC CTCCCTTGGA AACTGAACTA TATACATCCA
  TTGCACAGGC AGGGGTTTTG TGTGGCTGCC TCCTAGCGTG GAGGTGACAG CCGTATCCTC
  TCCCCACTGA AGTTCTTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386556754	MGP_WTSI_12_77809726	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221222437					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386556754	MGP_WTSI_12_77809726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76755513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4785	CpG island 4785	593 bp proximal
Rr468233	regulatory region 468233	within coordinates
Rr468234	regulatory region 468234	1274 bp proximal
Rr468235	regulatory region 468235	1798 bp proximal
Sptb	spectrin beta, erythrocytic	within coordinates
Tssr116745	transcription start site region 116745	1216 bp downstream
Tssr116746	transcription start site region 116746	1258 bp downstream
Tssr116747	transcription start site region 116747	1290 bp downstream
Tssr116748	transcription start site region 116748	1338 bp downstream
Tssr116749	transcription start site region 116749	1356 bp downstream
Tssr116750	transcription start site region 116750	1381 bp downstream