rs221228274 SNP Detail

Summary

• ID
  rs221228274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113508887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTCATG ACACTCGAAG
  AGAGCCGAGC TCAGAATGGA CACTTCCTGG CTCTTCATCC TTCTCTGTTC CCGGAAGGGT
  TTTTAACTAG AGGGGGCAAT AGGCATTGTA ACAACTGTGT CTCAGGGAGG AGGAGGCCTG
  AGCTCACTCA GGGCCCCTTC TTTCCCCCAG GGCCACTCCC CTCGTTCTGA GAGCTGCACT
  W
  TTCAACCCTT CAACCCCGCC CATAAAAAAA CCTAAAGACA AGCCAACCCA CACAACACTA
  GGACCCGACA ACCACTGCTT CAATCTCCAT CAAGTCCACA GAGCCCACAC ATCTCGTAGA
  GATGGTGCCA GTGAGCGACA CTCTGACTTA CAAGAATTCC GGGCTGCTTT TACCTGCTGC
  CTGGCTCCCT GTCAAAACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384781567	MGP_WTSI_11_113479375	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	T	T	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221228274					SNP	A	A	A	T	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	T	T	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384781567	MGP_WTSI_11_113479375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113508887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			538 bp proximal
Rr403100	regulatory region 403100			93 bp downstream
Rr459386	regulatory region 459386			within coordinates
Rr459387	regulatory region 459387			341 bp proximal
Rr459388	regulatory region 459388			791 bp proximal
Rr459389	regulatory region 459389			1426 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			1281 bp upstream
Tssr105751	transcription start site region 105751			1257 bp upstream
Tssr105752	transcription start site region 105752			1319 bp upstream