rs221233782 SNP Detail

Summary

• ID
  rs221233782
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84504209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTCCTTA ACCAAATGAA
  AAACTAATAA AACAGTTAAG GAAACTTTTT CTTGGGCAAC ATTTTGACCT TTTGGCAACT
  ACTTTATAAC TACAGAAATC AAGAAAAGCC AAAATATACT TTGTCTTCTA CAAGCTTTCG
  TGTCACCTAT AGCTAGTGTA AGGATTCCAC TGTCCAGTAG TCAGTAGATC TGCAGAGTAC
  A
  CTTAAAGTGG AAGACTTAAA GGTCTCCAAG GTCTCCAGTT ATAGCTCAGT GGTAAGATGC
  TTAGCTAGCA AGCATGAACC ACGGGGTCCC CAGCTCCACA CAAGACAAAA CAGCCATGTT
  AACATGTGAT TGATGCTCAG ATAGCTGGTG TGATATTAGC AGGGCAGCTG ATGTCCTTTG
  GGCCCTGGCG ATGGTTTCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261406	CHEV_16_84707566	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221233782					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84504209 () rs orientation: forward

Symbol	Name	Function Class
Gm60965	predicted gene, 60965	within coordinates
Mir155hgit	Mir155 host gene intronic transcript	within coordinates
Rr404939	regulatory region 404939	1890 bp downstream
Rr404940	regulatory region 404940	1185 bp upstream
Tssr139159	transcription start site region 139159	1741 bp downstream
Tssr139160	transcription start site region 139160	1673 bp downstream
Tssr139161	transcription start site region 139161	1436 bp downstream
Tssr139162	transcription start site region 139162	1553 bp upstream
Tssr139163	transcription start site region 139163	1729 bp upstream
Tssr139164	transcription start site region 139164	1999 bp upstream