rs221243988 SNP Detail

Summary

• ID
  rs221243988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184824701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTTGA TCAGCAGGAA
  TCTCACCCAC GTGTGTGGAG GCACCACCCC AATTTGCACA CAAGAGCCAT CTGCTTACTT
  AGCATCTGGA GCAGGTTGGT CGGGACCAAC CTCATCTGAA GAGTTTCTGG TCATCTTGAA
  CTTAACTCGT CCCTCAACTG CCTGAAGGTA CTTGATGGTG GGGGCACTTA GTTTCCTGGG
  W
  CACTGACTAA CTAGCACCCT TCCAGGGAGA TAAAAATTCT GCCTCAACAG AGATGGTGCC
  CTGAGCATCC CACTGTGTGT TCACACACCT GACTCAGGCA CACCACCTTT GCCTGCATGA
  GTGTGCAAGG ATGCACGGGA TGTTTAGATG GTTATAGTGC TGCAGCAGTA CCATATAGGA
  AAAACTATCA TCTTCTATTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320172338	CHEV_1_186916383	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221243988					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184824701 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	within coordinates
Rr425334	regulatory region 425334	297 bp distal