rs221251478 SNP Detail

Summary

• ID
  rs221251478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127871383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTCCCTG GTAATCCGCA
  ACTCGTTCTC TTAAAGAGGA AACCCGGACG CCGTCCTAAA CAGCTGTAGC TGTTTCGCAT
  ACGGTCTTGG CGCGTCCCTC GGGGTCAAGG CCATGACGGG GCGGCCCCTA CCGCCCCAGC
  CAGGCCCGCG CGTCCTCTTC GGAATTCATA GCCTTATTTA GACCGCGCCA CCGCCGTGCC
  S
  GTGAGAACAG CTGCTCGGCT GGCTACAGGA AGTAGAGGCC CGCGCGCCTG ACCCGGAAGC
  GCATGCTGGT CCCGCCCTCT CGGCGCCCGG CTTCCTTCTG CAACAGGCGT GGGTCACGGG
  CTCGCTCGTT CTCTTTCTGC CGCCATCTTG GTTCCGTGAT CTCCGCACAG TAAGTGCCGC
  TGGCGTCTCT GCTTTCCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382196993	MGP_WTSI_10_127472570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221251478					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382196993	MGP_WTSI_10_127472570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127871383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	within coordinates
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	1474 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	61 bp upstream
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96287	transcription start site region 96287	1906 bp downstream
Tssr96288	transcription start site region 96288	1839 bp downstream
Tssr96289	transcription start site region 96289	1820 bp downstream
Tssr96290	transcription start site region 96290	176 bp downstream
Tssr96291	transcription start site region 96291	159 bp downstream
Tssr96292	transcription start site region 96292	134 bp downstream
Tssr96293	transcription start site region 96293	within coordinates
Tssr96294	transcription start site region 96294	73 bp upstream
Tssr96295	transcription start site region 96295	90 bp upstream
Tssr96296	transcription start site region 96296	111 bp upstream
Tssr96297	transcription start site region 96297	123 bp upstream
Tssr96298	transcription start site region 96298	704 bp upstream