rs221257120 SNP Detail

Summary

• ID
  rs221257120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78521305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttCTGAGTC TATTCGTCCT TGTAATAGGG
  ACATCCTGTG AGGCTGAGTC TGTTACCAAA AGTGTATCGT GATGAGGAAG ACATAAACCT
  GGAGGTTATA GCAACCTAAA GACTGCACGG TTGAAATGAT CCTATTGGTT CTAATCTTCT
  Y
  TATTAATCTT GGAACACAAT GCTATCATAT TTTGTTATCA TATCATATTT ATCCCCGACT
  GCATTTCTTG TCCTTTACTA TGAAATCCTG TCTTGGGAAG TAACCCAGTT ACTCCAACTT
  TTTGTTTTTG TTTTTTTGTT TTTCTCATCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323016771	CHEV_9_78461830	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221257120					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78521305 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	1523 bp upstream
Cpgi22073	CpG island 22073	1472 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	188 bp proximal
Rr683598	regulatory region 683598	1260 bp proximal
Rr683599	regulatory region 683599	1621 bp proximal
Tssr86295	transcription start site region 86295	1429 bp upstream
Tssr86296	transcription start site region 86296	1459 bp upstream
Tssr86297	transcription start site region 86297	1478 bp upstream
Tssr86298	transcription start site region 86298	1715 bp upstream
Tssr86299	transcription start site region 86299	1734 bp upstream
Tssr86300	transcription start site region 86300	1781 bp upstream
Tssr86301	transcription start site region 86301	1798 bp upstream
Tssr86302	transcription start site region 86302	1814 bp upstream
Tssr90659	transcription start site region 90659	1622 bp downstream