rs221258470 SNP Detail

Summary

• ID
  rs221258470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACATTAA TATTAATCTA
  GACGAATGAT TGAATGTCCG GGATTTATTC GGGCCCGGGT AAAGAAGGAC CCGCAGCTGG
  GTCGCGTTTC CTTCCGGTCA CCTGAGTGTT TCTGCAGCTC AGATTCAGTG GGACTTCTAC
  TCTCAGAAGT GGTAGGATGT GGGTGGGTGT GCCGGCCTGT GTGATGTGAG CCCGAGCAGA
  Y
  GTCCAGGGAG TGATGGGGAG TGCCAAGGCT TCTCCAAGGA TTGGGGACGG AGGGGCATCC
  CGGGTCTCAG CGCTTGGCCC AGCACAGGGT GACCCAGGGC CACTCAGACT CGAGAGGAAA
  CAATAGCGAC TCCTTAGACC CTGGGATCCT GCCACTGGCT TTCCAAAGCC TTCCCGGACT
  ACCGGCGGTG CCTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439897	CHEV_2_102498519	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221258470					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	232 bp proximal
Gm57687	predicted gene, 57687	1338 bp upstream
Rr561712	regulatory region 561712	1697 bp distal
Rr561713	regulatory region 561713	within coordinates
Rr561714	regulatory region 561714	429 bp proximal
Rr561715	regulatory region 561715	429 bp proximal
Rr561716	regulatory region 561716	930 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	297 bp upstream
Tssr19098	transcription start site region 19098	123 bp downstream
Tssr19099	transcription start site region 19099	51 bp downstream
Tssr19100	transcription start site region 19100	214 bp upstream
Tssr19101	transcription start site region 19101	278 bp upstream
Tssr19102	transcription start site region 19102	315 bp upstream
Tssr19103	transcription start site region 19103	364 bp upstream
Tssr19104	transcription start site region 19104	390 bp upstream
Tssr19105	transcription start site region 19105	456 bp upstream
Tssr19106	transcription start site region 19106	481 bp upstream
Tssr19107	transcription start site region 19107	492 bp upstream
Tssr19108	transcription start site region 19108	535 bp upstream
Tssr19109	transcription start site region 19109	571 bp upstream
Tssr19110	transcription start site region 19110	851 bp upstream