rs221260427 SNP Detail

Summary

• ID
  rs221260427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46925696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTATTCA CTTACCTCTT
  CTAAATTTAC AGTAAACAGA CAAAACTTAA AACAAAAACA AAAAACCCCT CCCCATTCGT
  GATTCTAAGC ATTTTCACAT GTTTCCTTCC TGTCTCTGTT ATTTATATTT TATCAGTGTT
  TTATTATTAT TACAGCCTGA CTGAAATCAT GAGGCCTTGG AAATTTTGAC ATTTAACATG
  Y
  GTGGCATCTG GCACAGTGGG GACAGGTTAT CTATTTATAC CATACAGGTA CTTTTCAGCT
  ACTCAGTTCC TGAGTTAAAT GTGAAGTCAC CAAATGCAAG CCAACATGTC ACAGTGTTGT
  GAATTAATGT CTTTAGCACA TCTTTAGTTT GGATATGGCT ATCTAGAACT GTGGAATTCC
  ATGTTTGGAG TAAGATCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374535004	MGP_WTSI_8_47558013	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221260427					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374535004	MGP_WTSI_8_47558013	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46925696 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	within coordinates
Cpgi20317	CpG island 20317	849 bp distal
Gm45244	predicted gene 45244	within coordinates
Gm64268	predicted gene, 64268	1695 bp upstream
Rr186591	regulatory region 186591	within coordinates
Rr186592	regulatory region 186592	1904 bp proximal
Rr368530	regulatory region 368530	1802 bp downstream
Tssr2561	transcription start site region 2561	942 bp downstream
Tssr77199	transcription start site region 77199	1581 bp downstream
Tssr77200	transcription start site region 77200	1550 bp downstream
Tssr77201	transcription start site region 77201	1473 bp downstream
Tssr77202	transcription start site region 77202	955 bp downstream
Tssr77203	transcription start site region 77203	874 bp downstream
Tssr77204	transcription start site region 77204	758 bp downstream
Tssr77205	transcription start site region 77205	706 bp downstream
Tssr77206	transcription start site region 77206	266 bp downstream
Tssr77207	transcription start site region 77207	247 bp downstream
Tssr77208	transcription start site region 77208	1717 bp upstream
Tssr81204	transcription start site region 81204	1043 bp upstream
Tssr81205	transcription start site region 81205	1008 bp upstream
Tssr81206	transcription start site region 81206	229 bp upstream