rs221264200 SNP Detail

Summary

• ID
  rs221264200
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGAGGCAC TGCAGGCTGA
  CAAAGAGAGG CTGACAGCTG CGCTTCCTCT CTCCACCCAT TTGTGATTGC CAGCACAGTA
  GATGGAAGTG CTACTGCCTG GACAGTTGTC CTGTCCTCGC ACTGTTGACA GATTCATCCA
  GTTCCCTAGC CACTCACAAG GGAAGCAGAG TTCAGTTAAG AAGACGTTCA CTTTGGGTGT
  S
  CTGGTGTGTG CCAGCACTGG AGGCTGAAGA GGGCTTTGAG TTTCCCCTCC CCTCCCCTCC
  CCTCCCCTCC CCTCCCCTCC CCTCCCCTCC CCTCCCCTCC CCTCCCCTCC CCTCCCCTCC
  CTTCCTTTCC TCTCCTCTTC AATTCTCTCT CTCTCTCTCT TAACAAAGAA AGAAAAACAA
  AAATGAAGGG CTAGTGGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121691	CHEV_7_26198394	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221264200					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112800 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	489 bp upstream
Tssr2143	transcription start site region 2143	573 bp upstream
Tssr2144	transcription start site region 2144	425 bp upstream
Tssr2145	transcription start site region 2145	401 bp upstream
Tssr2146	transcription start site region 2146	388 bp upstream
Tssr2147	transcription start site region 2147	343 bp upstream
Tssr71243	transcription start site region 71243	559 bp upstream
Tssr71244	transcription start site region 71244	534 bp upstream
Tssr71245	transcription start site region 71245	519 bp upstream
Tssr71246	transcription start site region 71246	490 bp upstream
Tssr71247	transcription start site region 71247	462 bp upstream