rs221274534 SNP Detail

Summary

• ID
  rs221274534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122823574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAATAT GATCAAAGTA
  CATTATCTAA ATTTTATTTC ATTTTTAAAA CTTTTTGTGT ATATTATCAA ATTAAAAAAT
  TCAGGACACT ACACAGTAGG GGAGAGGCTG GGCCTTTACC TCAGTCCTTC TAGAGATGAA
  AGTGTAACAT CCGTAAAGGC CCTCCTCAGA GTTTTAAAAT CCGGGGATAC AACTATAAAG
  Y
  TCCGTTCAGT GCATAATCCC AAAATAAGCA GAGCTCTTGG AAGAAATCAG TTATTGCCAC
  AGTTACTGTA CTTTCAGGCT TCACATCATG CCAAGACTTT ACAGCCTGCT GACCGTCACA
  TAACCCAGGG ATGGACACTC AGACATCCAG AGCCTCAGAG GACCAGAAGG CTGACATTCC
  TGCCATAGTA GCTCTGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914717	MGP_WTSI_6_122796633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221274534					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914717	MGP_WTSI_6_122796633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122823574 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	525 bp downstream
Foxj2	forkhead box J2	1249 bp downstream
Tssr58709	transcription start site region 58709	1354 bp upstream
Tssr58710	transcription start site region 58710	1543 bp upstream
Tssr62965	transcription start site region 62965	80 bp upstream
Tssr62966	transcription start site region 62966	1136 bp downstream
Tssr62967	transcription start site region 62967	1174 bp downstream
Tssr62968	transcription start site region 62968	1251 bp downstream
Tssr62969	transcription start site region 62969	1555 bp downstream
Tssr62970	transcription start site region 62970	1588 bp downstream
Tssr62971	transcription start site region 62971	1653 bp downstream
Tssr62972	transcription start site region 62972	1755 bp downstream
Tssr62973	transcription start site region 62973	1814 bp downstream
Tssr62974	transcription start site region 62974	1881 bp downstream
Tssr62975	transcription start site region 62975	1992 bp downstream