rs221274989 SNP Detail

Summary

• ID
  rs221274989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5771905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAGGG CTATCTTAAG
  AGAGATTATT TTATAGCTCT ATCCTATTTT TTGCTACTTA AAAAACTACA TCTAAAGAGG
  CTACAGGCAG GTTCAGATCC CCTCAAAGTG GAGTTATAGA CAGTGGTTTG CTGCTATATG
  GGTGCTAGAA ATTGAACTCG GATCCTATGC AAGAGCACCC AGTACTTTTA AACATAGAGC
  Y
  ATCTTTTGCT CCATGCTCTG TGCTATGTAA ATGTAACATA GTTTTAATTG TTAAAAGTGT
  CAACTGAAGT TATATTGGTA CAATCAAAAA CCATTTTTAT CTTTATCTCT ATATTAAAAA
  CACAAAACCA AGAAGATGTA AAAATAACTA TGTTATGATC TATTCTGGAC TTTGTTCAAT
  AGATAATCAT ATAGAGTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223043	CHEV_13_5721152	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221274989					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5771905 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1945 bp upstream
Rr474521	regulatory region 474521	1582 bp proximal