rs221276305 SNP Detail

Summary

• ID
  rs221276305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGAATG CACTCGGTGG
  CCCCTGTATC CGGCTGTTCC CGGCTCTGGC CGCTGCGATA GAGCTTATCT GGCGGGTGTC
  AGGGTTCAGC GGCCGAGGGA CCGGGGTTCC CGGAAGCCTC CAGCCCCGGC CCTGCGCCCC
  CGGATGCCGC GCTGGCCCGT CGTATCACCG CGCTGCGCGG ACACTCCTCT GCCGTAGCTG
  W
  AGGAGGCCAC CTCCTGCTCC CATCCCGGCT GATTCCAAGT CCACGCAAGG CTCTTGGCCC
  CCCAAAGACT CGGATTAATC ACTCGGGGTC CAATGCCTGC CTGGGATGGA GCGGAGGGGA
  CCTCTGCAAG TTTTCTGTTT ACTTAGCGCT GCGCGGGGCT GCAGCTAATC ACTCGCAGGC
  AGGGTCGGGC TCCCTCCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356517424	MGP_WTSI_2_167876115	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221276305					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356517424	MGP_WTSI_2_167876115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	within coordinates
Gm57439	predicted gene, 57439	188 bp upstream
Rr406967	regulatory region 406967	within coordinates
Rr570860	regulatory region 570860	259 bp distal
Rr570861	regulatory region 570861	402 bp distal
Rr570862	regulatory region 570862	within coordinates
Tssr27820	transcription start site region 27820	534 bp upstream
Tssr27821	transcription start site region 27821	251 bp upstream
Tssr27822	transcription start site region 27822	215 bp upstream
Tssr27823	transcription start site region 27823	187 bp upstream
Tssr27824	transcription start site region 27824	1331 bp downstream