rs221276486 SNP Detail

Summary

• ID
  rs221276486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAAATA GAGTTGGAAA
  GTGACCAAGG AAGACAGGCA TTGACCTCTG GTCTACACTT CTTATGTGTG CACACGAGCA
  CATACATATA CACACATTCA TAAGATAAAA ATAAAGTCAC AAAAAAGAGG AGTGGTTGGG
  ACTGTCCATA AAGCCCTCCC ACCTCCACCT TTATTTTCAC ACAAACAAAG ATACACACAG
  Y
  CAAGTGGTTG GTGGCACACG CCTTCAATCC CTGCACTGGG GAAGCAGAAG CAGATGATCT
  CTGAGTTTGA GGCCAGCCTG GATTCCAGGA CAGCCAGGGG CCACACAGAG AAACCCTGTC
  TCAGAAAAAA AAAAAAAAAA ATCCATGAAC ATACATATGC AAATATGCAT ATACAAAAAC
  AAGCACATAA GCACACAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382290395	MGP_WTSI_11_5967839	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221276486					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382290395	MGP_WTSI_11_5967839	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017836 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1474 bp upstream
Cpgi2551	CpG island 2551	1319 bp distal
Cpgi2552	CpG island 2552	435 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442231	regulatory region 442231	1598 bp distal
Rr442232	regulatory region 442232	199 bp proximal
Rr442233	regulatory region 442233	694 bp proximal
Rr442234	regulatory region 442234	1216 bp proximal
Tssr106688	transcription start site region 106688	1925 bp upstream
Tssr106689	transcription start site region 106689	1716 bp upstream
Tssr106690	transcription start site region 106690	1699 bp upstream
Tssr106691	transcription start site region 106691	1471 bp upstream
Tssr106692	transcription start site region 106692	1452 bp upstream
Tssr106693	transcription start site region 106693	1425 bp upstream