rs221279762 SNP Detail

Summary

• ID
  rs221279762
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGGAAG CTCAACCCTT
  ATTGAGCCCC ACCCAGCCCC ATCCTATACC CAGCTTCCCT GGGGACCCCT AGAAGGCCTC
  TGAGTCCCTC TGCACAGCCC TGGGATCCTG GGCACCCCAA CACCCCTGGC CAGATCTTTT
  GTACCCTGAT AGCTGAACCC CTCATCACAC AGTGGGGTAA CTGAAGACAG AGAGCAAAGA
  M
  GAGACTCTGG CTTGATTTTG GGGTGAGGCT AAGGCTAGGG CAGCCATTCC TGACCTGTCA
  TCTGTCCCCC AGCTGGCAGC TGATGGCACA GTCATGAACA CCTTTGCTCA CAAGTGCCAA
  CTACCAGAGG ATGTGGACCC AACATCGGTG ACCTCGGCCC TTCGAGAGGA TGGTAGCCTC
  ACCATCCGGG CGCGGCGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520385	MGP_WTSI_4_140979721	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221279762					SNP	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520385	MGP_WTSI_4_140979721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1966 bp distal
Gm70191	predicted gene, 70191	540 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	1019 bp proximal
Rr603760	regulatory region 603760	1497 bp proximal
Tssr40059	transcription start site region 40059	1984 bp downstream
Tssr40060	transcription start site region 40060	1924 bp downstream
Tssr40061	transcription start site region 40061	1914 bp downstream
Tssr40062	transcription start site region 40062	1283 bp downstream
Tssr40063	transcription start site region 40063	190 bp upstream
Tssr40064	transcription start site region 40064	250 bp upstream
Tssr40065	transcription start site region 40065	265 bp upstream
Tssr40066	transcription start site region 40066	394 bp upstream
Tssr40067	transcription start site region 40067	442 bp upstream
Tssr40068	transcription start site region 40068	494 bp upstream
Tssr40069	transcription start site region 40069	626 bp upstream
Tssr40070	transcription start site region 40070	711 bp upstream
Tssr40071	transcription start site region 40071	735 bp upstream
Tssr40072	transcription start site region 40072	780 bp upstream
Tssr40073	transcription start site region 40073	803 bp upstream
Tssr40074	transcription start site region 40074	828 bp upstream
Tssr40075	transcription start site region 40075	841 bp upstream
Tssr40076	transcription start site region 40076	868 bp upstream
Tssr40077	transcription start site region 40077	887 bp upstream
Tssr44314	transcription start site region 44314	1167 bp upstream
Tssr44315	transcription start site region 44315	228 bp downstream
Tssr44316	transcription start site region 44316	311 bp downstream
Tssr44317	transcription start site region 44317	369 bp downstream
Tssr44318	transcription start site region 44318	752 bp downstream
Tssr44319	transcription start site region 44319	1762 bp downstream