rs221286062 SNP Detail

Summary

• ID
  rs221286062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79756970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGGAGCC GGAGCGCCTG
  CCCGCGCGGG TGTCAGGCCG ACGTGGTCGG TCACCTGAAG TTCACGGAGG GTGGGGGAAG
  GGTTAAGGTT ATGGTGTCTC GGGTTATGTG TGAGCGTGTG TGTTTCCGCC GCAGACGGGC
  GAGCGCGATC GATCTCTCCT TCGCGAAATC TCCGCGGCGG TGCCCACGCG AGGGGTCCGC
  R
  GGGCTGCTGT GGCCCGGGCG GGCGCGGTGG CACCCGGAGT GGCGAGCAAG GGCACGCGCG
  GGCAGTCTGC TCCGCAAACA TTCCTCTTTT CTTCCCCCTT CCCGGTATGC AAGGAGTCGA
  CGCACAGGGC TAGGGTTATG CTTTTTTTCC CCTTCCTTTA GGGAGGAAAA AAAAAAATGC
  CCCCGTGCAG TCCTTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274865	MGP_WTSI_8_81554240	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221286062					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274865	MGP_WTSI_8_81554240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79756970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	1912 bp distal
Cpgi20620	CpG island 20620	within coordinates
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	1734 bp downstream
Rr665784	regulatory region 665784	1744 bp distal
Rr665785	regulatory region 665785	1233 bp distal
Rr665786	regulatory region 665786	within coordinates
Tssr2612	transcription start site region 2612	1975 bp downstream
Tssr78126	transcription start site region 78126	1991 bp downstream
Tssr78127	transcription start site region 78127	1728 bp downstream
Tssr78128	transcription start site region 78128	1687 bp downstream
Zfp827	zinc finger protein 827	within coordinates