rs221290820 SNP Detail

Summary

• ID
  rs221290820
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164618062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGTTCC AGAGGATTCA
  ATGCCATTGT CCGGCTTCCT CGGGCACCAG GTAAAACATT TACACACCTA AATAAATCTA
  AAAAGAGGTT TTGGTTTTTT TTAATGTTTA TGTGGGGGGA AGAGGACAGG ACAGGGATGG
  AAGGGGTGGG CTAAAGTATG AATGAAGTAA GAAAATTCCA AGTTTCAAGA ATGATGGCAG
  D
  CTGGGTGTAT TAATTAATTA AATAATTAAT CCCAGCACCC AGGAGGCAGA GGTTGGTAAG
  TTTAAGGCCA GCCTGGTCTA CATAGTGAGT TCCAAAGTAG CCAGGGCTGC ATAAAGTGAT
  CCTGTCTTTA AAAAAATAAA AAAGGGAATG TGACTCAGCG GCCGAGCATT TGCCTAGCAT
  TCCTTTGTTG GTTCCATCTT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440636	MGP_WTSI_2_164601642	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221290820					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440636	MGP_WTSI_2_164601642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164618062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	762 bp proximal
Rr569698	regulatory region 569698	1493 bp distal
Tnnc2	troponin C2, fast	1019 bp downstream
Tssr760	transcription start site region 760	1679 bp downstream
Tssr21644	transcription start site region 21644	1343 bp upstream
Tssr21645	transcription start site region 21645	1377 bp upstream
Tssr21646	transcription start site region 21646	1415 bp upstream
Tssr21647	transcription start site region 21647	1600 bp upstream
Tssr21648	transcription start site region 21648	1800 bp upstream
Tssr27530	transcription start site region 27530	1665 bp downstream
Tssr27531	transcription start site region 27531	1831 bp downstream
Tssr27532	transcription start site region 27532	1849 bp downstream
Tssr27533	transcription start site region 27533	1893 bp downstream
Tssr27534	transcription start site region 27534	1934 bp downstream