rs221292887 SNP Detail

Summary

• ID
  rs221292887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119911026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAGGCCA CCAGTTAAAC AAACAGCAGT AAGAAATGTA
  ATGCCATCCT AATGGTAGAG TAACTCACTT TAAAGTGTGC TTATCTACTC AGAAAACAAT
  R
  TTGGGTTTTT TTTGGGGGGG GGGTTGTTTT GTTTTGTTTT GTTTCAGGTC AGGGGCAGAC
  CTAACAAACA TTTTGTTTGC TCATGTAGGA AGAATTGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324207700	CHEV_12_121185764	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221292887					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119911026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	541 bp distal
Rr474318	regulatory region 474318	871 bp distal
Tmem196	transmembrane protein 196	within coordinates
Tssr115576	transcription start site region 115576	1158 bp downstream