rs221298020 SNP Detail

Summary

• ID
  rs221298020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCTAGT AGGAAGTCTA
  GGAGCCCCAG CCTAGACCAG ACCAGGTCTA TCCAAGACAA CCAGCGAATG CCCTCTCTCC
  AGCCCTGCGT CCTGGTCCAT CATGACCTGA GTATGTGTTT GAGTATGAGC GTCTTTTGTG
  ACCATCAGTG ACTGAGAGTG TCTGCTGCAG GGTGGGTACA GATACAGACA GCACTGAGCG
  M
  ACGGGTAGAT GTTTCTACAC GCGGGACTGC CAATGACTGT CCATCCCAGC AGCTGCACTC
  CACTTCCTTC TGCCGGTTGG TCTCACATCT CAGGCTCCCT CCAGCTGCCA TTCTAGGGTC
  CCTCATTTGC AGTCACACTG ACCTTGCCTG GTTTGCAAGG CTGAGAAGGG GGATGGCATG
  TGGAGCAGTG GCTGCAGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417492	CHEV_13_70981576	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221298020					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990817 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	887 bp upstream
Cpgi5821	CpG island 5821	858 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482302	regulatory region 482302	1988 bp distal
Rr482303	regulatory region 482303	955 bp distal
Rr482304	regulatory region 482304	397 bp distal
Tssr123158	transcription start site region 123158	982 bp upstream
Tssr123159	transcription start site region 123159	944 bp upstream
Tssr123160	transcription start site region 123160	915 bp upstream
Tssr123161	transcription start site region 123161	888 bp upstream