rs221298896 SNP Detail

Summary

• ID
  rs221298896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTTAG AAGTTTGGAC
  CATTTGATCG CCCTCTTGGT GAGTATCACC AGGTACGTGG AAAAGAATTC TTCATAAGCC
  GCATAGTCAA AGTCTTCGGG CCTTTCAAAC CCATACGGAT CGATCCTACA AACAAAAAGA
  ACCTGTTTCC CCGAACCAAG TTTCCGCGCC TGCGGGGATG CGGCTGGGGT CCAAGAGCTC
  Y
  GACACCCGAC ACCCCTCGGT CCGCCCCTCC GTCCATCCTC AGTTCACCTT CCCTTCCTCT
  CTTCCTCCCC TCCTCCATCC CCTCCACCCC CTCATGCCCC TCGCTCTCCG TGGACCAGAG
  CGCGTCCCCC GCGCAGCATC GACTGGCTCA GACCCAGTCC GGAGAGGGCG CCCAGCACCC
  CGCGCGCGCG GCCTCCGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373740642	MGP_WTSI_8_13200276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221298896					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373740642	MGP_WTSI_8_13200276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			506 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			366 bp downstream
Grtp1	GH regulated TBC protein 1			Intron
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			708 bp distal
Rr659873	regulatory region 659873			249 bp proximal
Rr659874	regulatory region 659874			689 bp proximal
Rr659875	regulatory region 659875			1208 bp proximal
Rr659876	regulatory region 659876			1596 bp proximal
Rr659877	regulatory region 659877			1947 bp proximal
Tssr76386	transcription start site region 76386			500 bp upstream
Tssr76387	transcription start site region 76387			670 bp upstream
Tssr80428	transcription start site region 80428			300 bp downstream
Tssr80429	transcription start site region 80429			1137 bp downstream