rs221300028 SNP Detail

Summary

• ID
  rs221300028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAAAGG TAAGGCCATC
  TCAGCAGCGC CAGGCGCCTG CAGTGGAGCG TGCCTGGCCT GCAGAGGCAG ACTTCTTCCA
  CTTTTCCTCC GCCCCCGCGC AGGACTAGGC TCTGCAAGAG CCACGTTTCC ACATTTCTGC
  CTGCCTGACA ATCCTACTAG AAGTTTACAA TTGCCTGGAC CCCAGTGGTG GTCTTCGGCT
  Y
  CAGGGCCAAG GTTTTGAAGC CGTTTTTTGG GGCCAGGACG CCTGCCCCAG AGTCTGTACA
  CTCTTAGGAA AAGGGGAAGA AGGCGCCCCG GGAACTGTCC CAGAGAGGGC GGAGCACTCC
  CATCCCGGGG CAGGGCAATA AGGGAGCTCC CGCTCCCGGA ACGTTGCAAG CAATCTCATG
  AATGTCGCAG GGGGGCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356682625	MGP_WTSI_2_173901566	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221300028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356682625	MGP_WTSI_2_173901566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	761 bp distal
Cpgi12852	CpG island 12852	82 bp proximal
D130084N16Rik	RIKEN cDNA D130084N16 gene	1408 bp upstream
Gm75644	predicted gene, 75644	1111 bp upstream
Rr397552	regulatory region 397552	1312 bp upstream
Rr572061	regulatory region 572061	1122 bp distal
Rr572062	regulatory region 572062	621 bp distal
Rr572063	regulatory region 572063	181 bp proximal
Rr572064	regulatory region 572064	367 bp proximal
Rr572065	regulatory region 572065	868 bp proximal
Stx16	syntaxin 16	243 bp upstream
Tssr22077	transcription start site region 22077	231 bp upstream
Tssr22078	transcription start site region 22078	980 bp upstream