rs221304782 SNP Detail

Summary

• ID
  rs221304782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130912791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAAAG GAGGGAATGG
  GATAAGCAGA ATAACGTATT CCTGTCCGCC ACACAGCTCT GGACTCACCT CCAGGTGTGA
  TAGGCCACCA GACCCAGCAG CAGGCACAGG AAGCCTGCCA GAAATCCCAG GACCCAGAGC
  AGCCTCTGGA ACAGCTGCAG TTGGTGCAGA GCTGCAACAG GAAGGAGAAG CTGAAGGAGC
  W
  ATGTGGGCTT CAGACCCTCA ACATTCCCTC CCGAGGTGAC CCAACCAAGA CAAGATGGAT
  TTTAACTTTC ACTTCATCCC TGAAGCCCTG TGCAAGCCAT CCATATGGAC TGCTCAGACA
  AGTTGTCTGG TGGCAGGAGG GATCTGGGAA GGCAGCCTTA GGACAAGAGG ATCTTCCTGC
  AGGGAGAGTC CAGAGGGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355675428	MGP_WTSI_2_130896607	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221304782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355675428	MGP_WTSI_2_130896607	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130912791 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26341	transcription start site region 26341	1981 bp upstream
Tssr26342	transcription start site region 26342	1955 bp upstream
Tssr26343	transcription start site region 26343	1907 bp upstream
Tssr26344	transcription start site region 26344	1856 bp upstream
Tssr26345	transcription start site region 26345	277 bp downstream
Tssr26346	transcription start site region 26346	358 bp downstream
Tssr26347	transcription start site region 26347	391 bp downstream
Tssr26348	transcription start site region 26348	508 bp downstream
Tssr26349	transcription start site region 26349	1752 bp downstream
Tssr26350	transcription start site region 26350	1765 bp downstream
Tssr26351	transcription start site region 26351	1782 bp downstream