rs221305412 SNP Detail

Summary

• ID
  rs221305412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58010182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GAGGAGGAGT TGGGGGGGCT
  M
  ATAGCAGGTG TTTTGACATT TGTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325635291	CHEV_18_58036764	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221305412					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58010182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	617 bp proximal
Rr393751	regulatory region 393751	338 bp upstream
Slc12a2	solute carrier family 12, member 2	1568 bp upstream
Tssr5332	transcription start site region 5332	1181 bp upstream
Tssr151207	transcription start site region 151207	1486 bp upstream
Tssr151208	transcription start site region 151208	1510 bp upstream