rs221319077 SNP Detail

Summary

• ID
  rs221319077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95562615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCCAG GAGGTGGGTG
  AGCTCCAGCC TCTAAGCTTG ATGTCTTCAT CTCAACAGTC CTGGGATTAC AGACATACAC
  TTACCTCCAC AGCAATCTAT GGGGTGCCAC AGGCCAAACC CAGGGCTCTG GGGATGCTAG
  GTGAGCACCC ACCACCCATC AACTGCTCCC AGCCCGGCCC TTATAATCCT AAAGGTCACA
  Y
  ACCTCCACCC TAAAAGTACA CAAGACTCTC TTCTTCAACT TGATGGCTTG GCCTGTAAAA
  TGTACCCTCA ATGTCTGGGA GGTGTATGCC ATGGGACCCT GAGGCACTCC ATTCTCTCCC
  TGTCCCCTGG GTCCTGGGAT CTGATTGAGA TTGTCAAGCC AGTTGGCAGG CAGGCAATCC
  CCTAAGCCCG TGTCTCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358905302	MGP_WTSI_3_95459226	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221319077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358905302	MGP_WTSI_3_95459226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95562615 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	1480 bp upstream
Gm65002	predicted gene, 65002	978 bp downstream
Rr366848	regulatory region 366848	within coordinates
Rr580999	regulatory region 580999	1423 bp distal
Rr581000	regulatory region 581000	1148 bp distal
Tssr971	transcription start site region 971	1507 bp upstream
Tssr30620	transcription start site region 30620	1541 bp downstream
Tssr30621	transcription start site region 30621	1397 bp downstream
Tssr30622	transcription start site region 30622	1380 bp downstream
Tssr30623	transcription start site region 30623	1371 bp downstream
Tssr30624	transcription start site region 30624	869 bp upstream
Tssr34506	transcription start site region 34506	1579 bp upstream