rs221336004 SNP Detail

Summary

• ID
  rs221336004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82424542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGACGCG AGAACATCCT
  AAGGGGAGAA GCCCTGAACC GGCCTGGGCC CAAGAAAGAA ACGAATGGAA AATTCCCTCA
  CACCCAGGCC GCCCCGAGCC GGGGCTAGGG CGCCGACTCT AGCACCCCAG GCGGCTGGAG
  GGAGAGGGAG GGTGGAGGCG GGGGCCAGAG TGAACTTGGC CTCCTGGAGT TGCAGCGGAC
  R
  GGCGCGGAGC CCGGGGCGCG GCGGGCAGCC CAGCCCGGAG CTCGCACTGG CGATCGGAGA
  GGGGCGCCGG GGTCCCCAGG GTCCCCCGAG CCTCGCCGCA GCGGCCCGCC CTCCCCCGGC
  GCCCGGTGCA CGTGGCCGCG CTCGGAGCGG GAAGGCCGCG CCACCGCTCG CCCCTCCTCT
  CCTCCTCCTC CTGCCGCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss362190673	MGP_WTSI_4_82152209	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs221336004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190673	MGP_WTSI_4_82152209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82424542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm11266	predicted gene 11266	1684 bp upstream
Gm57123	predicted gene, 57123	434 bp upstream
Nfib	nuclear factor I/B	within coordinates
Rr376744	regulatory region 376744	1408 bp upstream
Rr594357	regulatory region 594357	1008 bp distal
Rr594358	regulatory region 594358	within coordinates
Rr594359	regulatory region 594359	1097 bp proximal
Rr594360	regulatory region 594360	1598 bp proximal
Tssr37680	transcription start site region 37680	351 bp downstream
Tssr37681	transcription start site region 37681	1641 bp upstream
Tssr37682	transcription start site region 37682	1701 bp upstream
Tssr42247	transcription start site region 42247	1407 bp upstream
Tssr42248	transcription start site region 42248	1076 bp upstream
Tssr42249	transcription start site region 42249	1050 bp upstream
Tssr42250	transcription start site region 42250	947 bp upstream
Tssr42251	transcription start site region 42251	919 bp upstream
Tssr42252	transcription start site region 42252	704 bp upstream
Tssr42253	transcription start site region 42253	615 bp upstream
Tssr42254	transcription start site region 42254	566 bp upstream
Tssr42255	transcription start site region 42255	503 bp upstream
Tssr42256	transcription start site region 42256	499 bp upstream
Tssr42257	transcription start site region 42257	467 bp upstream
Tssr42258	transcription start site region 42258	438 bp upstream
Tssr42259	transcription start site region 42259	127 bp downstream