rs221338532 SNP Detail

Summary

• ID
  rs221338532
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCAGA TGATACCCTT
  TGGCTCTGAC CTTCTGTGAT GCACTCTTGA GAATAATAAT TAAGTAATTG AAGTTTATGC
  ATGTAGCATA TTGCTCATAG TTCCTTAATA TCACTTAGGT CATCCTGTTT TGAGATCTAG
  TAAATTGTAT CTGTGTCTAA TGTCTGTCTC CTCTACCAAC TGCTAAGTCC TTTGAGGTTG
  W
  ATCTGATTCA TCTCTGTGTC CACCCACTGG GCCTGGCACA GGCAGGTCTG AGCACACATT
  TGTGTTCAGT AAACATCTGT GGAATGAAAT TGCTTCAATA AATCACTAAT ATGTGTACGG
  TCATCGGCAT CCAGATGATT TGGAGCCACT TTGGAGTCAC AGATGTGAGA AGGGTCAATA
  AGGCAGGATA GACAGGATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353684	CHEV_7_109400993	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221338532					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1495 bp distal
Rr652563	regulatory region 652563	1866 bp distal
Rr652564	regulatory region 652564	1537 bp distal
Tssr73947	transcription start site region 73947	2000 bp upstream
Tssr73948	transcription start site region 73948	1964 bp upstream
Tssr73949	transcription start site region 73949	1931 bp upstream
Tssr73950	transcription start site region 73950	1884 bp upstream