rs221340116 SNP Detail

Summary

• ID
  rs221340116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:38529286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGTTTG TGCCTTTTGC
  TGTTGACTTG GCGGGGTTGG GAGAGCCCAA GTCTGTCTTG GAGTAGTGGG GCGGTCAGTT
  TGACTATTGA TCAGGGACCG GCGGGGCGCT CAGGTCTCCA CCCCCAGCTC CAGCTCCTTT
  CCTCTGGGCT TTCGGATCAC CCCTCGCCGC CGTCCTCTAG AGTGTGGAGA GAAACATCCC
  S
  TCCCTCCCTG GTCTTAACGA AACCACTACT AACCCCCAGT TCCAGGGACG CTTCGTCGAG
  CCCTTACAGA ATCAACTTTT TTTTTTCGTG TGTGTGGAAA ATCTGACCCA AACCATGGTT
  TCTTAAAGTG GGTGTGTTTG GCCCCATTTT GTAGAAGTGT TTAGGCCTAT TTTTTTTTCC
  CACCGAGAGA CCTCCATTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368010459	MGP_WTSI_6_38502351	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221340116					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368010459	MGP_WTSI_6_38502351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38529286 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17313	CpG island 17313			36 bp distal
Gm56952	predicted gene, 56952			1061 bp downstream
Gm67915	predicted gene, 67915			1098 bp upstream
Luc7l2	LUC7-like 2 (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr399618	regulatory region 399618			139 bp downstream
Rr628836	regulatory region 628836			1578 bp distal
Rr628837	regulatory region 628837			1109 bp distal
Rr628838	regulatory region 628838			1429 bp distal
Rr628839	regulatory region 628839			538 bp distal
Rr628840	regulatory region 628840			within coordinates
Tssr55654	transcription start site region 55654			1544 bp downstream
Tssr55655	transcription start site region 55655			858 bp downstream
Tssr55656	transcription start site region 55656			815 bp downstream
Tssr55657	transcription start site region 55657			801 bp downstream
Tssr55658	transcription start site region 55658			782 bp downstream
Tssr55659	transcription start site region 55659			500 bp downstream
Tssr55660	transcription start site region 55660			541 bp upstream
Tssr60415	transcription start site region 60415			1095 bp upstream
Tssr60416	transcription start site region 60416			324 bp upstream