rs221340468 SNP Detail

Summary

• ID
  rs221340468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACTGA ACCGAGGAAC
  CCACTCATCT GTAACTGCCC ATCAACCTTA TGTAAAAGCC ACCCGTAAAT CAGCTATGAG
  ACAAGAAGGG CTTTGGAGCA AAAATCTCCA TTTCTTCTTC CTGAACCAGT CGGTCAGCAT
  GTCCACTGGA CCGGCCTGAT CTGAGGCGAA TGGCTTGTGT TAGCTTTAGA GAGCTGAGAC
  R
  GGGAGGTCGC AGCCTCTGTT AGCCTGTGTC CTCTGCTGAA GGAGAGGCCT GAGGATCCTG
  ATACGCAGCC TTCCAGTGAT GCCCAGAGCT GGTGGGAGAC CAGACCTGAA GAGAGCAGAG
  CTGCTGAACC TTCGCTGAAG TCCCGGCGAC AGGGGTCACT CCTCAGCTGG ACTCTTAGTC
  GCTGTTTACA AATCCCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169567	CHEV_1_186633985	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221340468					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	555 bp proximal
Gm70890	predicted gene, 70890	1818 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425289	regulatory region 425289	1894 bp distal
Rr425290	regulatory region 425290	1081 bp proximal
Rr425291	regulatory region 425291	1829 bp proximal
Tssr15650	transcription start site region 15650	874 bp downstream
Tssr15651	transcription start site region 15651	1050 bp downstream
Tssr15652	transcription start site region 15652	1064 bp downstream
Tssr15653	transcription start site region 15653	1153 bp downstream
Tssr15654	transcription start site region 15654	1180 bp downstream
Tssr15655	transcription start site region 15655	1198 bp downstream