rs221350542 SNP Detail

Summary

• ID
  rs221350542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25114406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGACGCTGA CCCGGCCGCA CTCCGGTCGC
  CGGCTGCCGG TACGCGCCTG GGCCGACGTG CGTCGCGAGA GCCGCCTCCT ACAGCTGCTC
  GCCCGCCTCC CCTTGTTCGG CCTGGGCCGT CTGGTTACCC GCAAGTCCTG GCTGTGGCAG
  S
  ACGACGAGCC ATGCTACTGG CGCCTCACGC GTGTGAGGCC CGACTACACG GCGCAGGTGC
  GCTAGCTTCC TGTACTGCCC ATTCTTGTTT CCACTTTCAT TTTGCCCACC CTGGACTATA
  CATCGGCTGG TTTCACCCAC TCTGAGCCAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325334805	CHEV_17_25032377	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221350542					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25114406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	345 bp upstream
Mrps34	mitochondrial ribosomal protein S34	within coordinates
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1068 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	265 bp downstream
Tssr143114	transcription start site region 143114	87 bp upstream
Tssr143115	transcription start site region 143115	1056 bp upstream
Tssr143116	transcription start site region 143116	1103 bp upstream
Tssr143117	transcription start site region 143117	1177 bp upstream
Tssr146794	transcription start site region 146794	355 bp upstream
Tssr146795	transcription start site region 146795	28 bp downstream